Just Put my clones that had decent Roots into my deep water system weighted about 2 weeks they've been progressively getting worse with no roots popping out so I pulled out the worst one and this is what I found.
I contacted current culture they had no idea what it was. I ended up ripping out all of the plants I had and that was the only one that actually had that issue.
I keep my water level always around 60 degrees because I noticed that between the water and the actual top of the lid it's a few degrees cooler than the actual room temp which I keep around 78 because I'm running all LEDset from Kigrow.com. I have noticed that most of my root issue started from the actual root crown and works its way out into the actual roots in the water and I think that's due because of the temperature rise in the air gap. Also I had my ppm too high which probably made the routes that dark color because I was burning them with 300 PPM, when it should have been around 150ppm.
I am starting new clones because I figured by the time I Rehabilitated those I could have clones already going with no roots issues.